1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggtcactttgttcagctgaataaaaaagtagtgcttataattcaaattaagaaactgaaagaaatgtatgttttgtgtcagAGTTGTGAAGTGTGCTGGACCAAAAGGGCATATTCTCAATCTAGGACACGGTGTCTTGGTAGGGACACCAGAGGAAGCCGTGGCTCATTTCTTTGAAACC
species | Arabidopsis thaliana |
transcript | AT3G14930.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAGCTTACCTATTCTCTCCGCTTCCTGCTTTGACCGAAGAAATTGAAAG AGTTGTGAAGTGTGEST: gi|125220920|gb|EL235005.1|EL235005
genomic: CCAGCTTACCTATTCTCTCCGCTTCCTGCTTTGACCGAAGAAATTGAAAGgtaggtcact ... tttgtgtcagAGTTGTGAAGTGTG
EST: TGACCGAAGAAATTGAAAG AGTTGTGAAGTGTGCTGGACCAAAAGGGCATATTCTCAATCTAGGACACGGEST: gi|124915986|gb|EH989860.1|EH989860
genomic: TGACCGAAGAAATTGAAAGgtaggtcact ... tttgtgtcagAGTTGTGAAGTGTGCTGGACCAAAAGGGCATATTCTCAATCTAGGACACGG
EST: CCAGCTTACCTATTCTCTCCGCTTCCTGCTTTGACCGAAGAAATTGAAAG AGTTGTGAAGTGTGCTGGACCAAAAGGGCATATTCTCAATCTAGGACACGGEST: gi|124767413|gb|EH857543.1|EH857543
genomic: CCAGCTTACCTATTCTCTCCGCTTCCTGCTTTGACCGAAGAAATTGAAAGgtaggtcact ... tttgtgtcagAGTTGTGAAGTGTGCTGGACCAAAAGGGCATATTCTCAATCTAGGACACGG
EST: CCAGCTTACCTATTCTCTCCGCTTCCTGCTTTGACCGAAGAAATTGAAAG AGTTGTGAAGTGT
genomic: CCAGCTTACCTATTCTCTCCGCTTCCTGCTTTGACCGAAGAAATTGAAAGgtaggtcact ... tttgtgtcagAGTTGTGAAGTGT
agtagtgcttataattcaaattaagaaactgaaagaaatgtatgttttgtgtcagAGTTGTGAAGTGTGCTGGACCAAAAGGGCATATTCTCAATCTAGGACACGGTGTCTTGGTAGGGACACCAGAGGAAGCCGTGGCTCATTTCTTTGAAACC
ttataattcaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtcactttgttcagctgaataaaaaagtagtgcttataattcaaattaagaaactgaaagaaatgtatgttttgtgtcagAGTTGTGAAGTGTGCTGGACCAAAAGGGCATATTCTCAATCTAGGACACGGTGTCTTGGTAGGGACACCAGAGGAAGCCGTGGCTCATTTCTTTGAAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA