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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatccttttttcctgagtcaaaggaataagttaataaacaaatgttttgacaagattttgtgtgttttcagGGACCTCTCTTCCAATGCTTTTATAGGGTCTCTCCCAAACACTTGTAGCTCTCTTACGAGTGCAAAATCAAT

Basic information

species Arabidopsis thaliana
transcript AT3G14350.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116468522|gb|EG511114.1|EG511114
EST:     TTGAAGCAGCTAGTTATTGACTTCACAAAACTCACCCCTCTCTCTATATT                         GGACCTCTCTTCCAATGCTTTTATAGGGTCTCTCCCAAACACTTGTAGCTC
genomic: TTGAAGCAGCTAGCTATTGACTTCACAAAACTCACCTCTCTCTCTATATTgtaagatcct ... gtgttttcagGGACCTCTCTTCCAATGCTTTTATAGGGTCTCTCCCAAACACTTGTAGCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaaaggaataagttaataaacaaatgttttgacaagattttgtgtgttttcagGGACCTCTCTTCCAATGCTTTTATAGGGTCTCTCCCAAACACTTGTAGCTCTCTTACGAGTGCAAAATCAAT
                            ttttgac  putative branch site (score: 3)
                                              tgttttc  putative PPT
        aataagttaataaaca  TA-rich tract