1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatatttgcttaaaattcacatgtgccttggtaatactaattcatattttatccaaaaaaaaaatgttgcttaaaatttccattgaagctcttgtggtgaaaaatgtttgctcagtatcaagctcttttctagGTCGTCAAAAGGAAACTCTGGAATGGCCAGCACGGCAAAAGATTGCTGTTGGAGCTGCAAGAGGTCTTCGGTATCTTCACGAAGAGTGCAGAGTTGGCTG
species | Arabidopsis thaliana |
transcript | AT3G13690.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTGGTCTATGAATACATTTGCAATGGTTCACTTGACTCTCATCTATACG GTCGTCAAAAGGAAACTCTGGAATGGCCAGCACGGCAAAAGATTGCTGTTGEST: gi|124994556|gb|EL066825.1|EL066825
genomic: CTTGGTCTATGAATACATTTGCAATGGTTCACTTGACTCTCATCTATACGgtaatatttg ... tcttttctagGTCGTCAAAAGGAAACTCTGGAATGGCCAGCACGGCAAAAGATTGCTGTTG
EST: CAATGGTTCACTTGACTCTCATCTATACG GTCGTCAAAAGGAAACTCTGGAATGGCCAGCACGGCAAAAGATTGCTGTTG
genomic: CAATGGTTCACTTGACTCTCATCTATACGgtaatatttg ... tcttttctagGTCGTCAAAAGGAAACTCTGGAATGGCCAGCACGGCAAAAGATTGCTGTTG
tccattgaagctcttgtggtgaaaaatgtttgctcagtatcaagctcttttctagGTCGTCAAAAGGAAACTCTGGAATGGCCAGCACGGCAAAAGATTGCTGTTGGAGCTGCAAGAGGTCTTCGGTATCTTCACGAAGAGTGCAGAGTTGGCTG
ctcttttct CT-rich tract
aaaaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatttgcttaaaattcacatgtgccttggtaatactaattcatattttatccaaaaaaaaaatgttgcttaaaatttccattgaagctcttgtggtgaaaaatgtttgctcagtatcaagctcttttctagGTCGTCAAAAGGAAACTCTGGAATGGCCAGCACGGCAAAAGATTGCTGTTGGAGCTGCAAGAGGTCTTCGGTATCTTCACGAAGAGTGCAGAGTTGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA