1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatggctttgttcttctgaaacgggcaattccttttcctttttttgttcttttttttcttttgtagttttgttataattgttgacgtgttatacatatttcacagTTGGAGGCCTCTTAAATGCTACATTCGGGAATGTGACAGAGCTGATCATATCAATTTTCGCTTTGAAAAATGGAATGATACGTGTTGTTCAGCTGACGTT
species | Arabidopsis thaliana |
transcript | AT3G13320.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAACTGGCTTGTTACACGGGTCCAACTG TTGGAGGCCTCTTAAATGCTACATTCGGGAAATGTGACAGAGCTGATCATEST: gi|124865697|gb|EH950134.1|EH950134
genomic: GCAACTGGCTTGTTACACGGGTCCAACTGgtatggcttt ... tatttcacagTTGGAGGCCTCTTAAATGCTACATTCGGGAA-TGTGACAGAGCTGATCAT
EST: GCAACTGGCTTGTTACACGGGTCCAACTG TTGGAGGCCTCTTAAATGCT
genomic: GCAACTGGCTTGTTACACGGGTCCAACTGgtatggcttt ... tatttcacagTTGGAGGCCTCTTAAATGCT
tttttttcttttgtagttttgttataattgttgacgtgttatacatatttcacagTTGGAGGCCTCTTAAATGCTACATTCGGGAATGTGACAGAGCTGATCATATCAATTTTCGCTTTGAAAAATGGAATGATACGTGTTGTTCAGCTGACGTT
tgttgac putative branch site (score: 3)
ttttgtagttttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggctttgttcttctgaaacgggcaattccttttcctttttttgttcttttttttcttttgtagttttgttataattgttgacgtgttatacatatttcacagTTGGAGGCCTCTTAAATGCTACATTCGGGAATGTGACAGAGCTGATCATATCAATTTTCGCTTTGAAAAATGGAATGATACGTGTTGTTCAGCTGACGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA