1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacgttaactttggtttcaggttttactgtgtgtaaactttgatggttctcttcatataatatcttagtttgataggctttcatgatacttgattattttcacttttagGACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAG
species | Arabidopsis thaliana |
transcript | AT3G11620.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTATTGGGCAAATATCTCACACGAGCAAG GACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAGEST: gi|19876798|gb|AU237629.1|AU237629
genomic: CTATTGGGCAAATATCTCACACGAGCAAGgtacgttaac ... tcacttttagGACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAG
EST: CTATTGGGCAAATATCTCACACGAGCAAG GACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAGEST: gi|86060664|gb|DR356421.1|DR356421
genomic: CTATTGGGCAAATATCTCACACGAGCAAGgtacgttaac ... tcacttttagGACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAG
EST: CTATTGGGCAAATATCTCACACGAGCAAG GACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAGEST: gi|86060666|gb|DR356423.1|DR356423
genomic: CTATTGGGCAAATATCTCACACGAGCAAGgtacgttaac ... tcacttttagGACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAG
EST: CTATTGGGCAAATATCTCACACGAGCAAG GACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAG
genomic: CTATTGGGCAAATATCTCACACGAGCAAGgtacgttaac ... tcacttttagGACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAG
atataatatcttagtttgataggctttcatgatacttgattattttcacttttagGACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAG
acttgat putative branch site (score: 5)
ttattttcactttt CT-rich tract
attattttcactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttaactttggtttcaggttttactgtgtgtaaactttgatggttctcttcatataatatcttagtttgataggctttcatgatacttgattattttcacttttagGACTGGGAGTCTGGGAGGCTATTTTCATTTCAAGAACAAATTGATCATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC