1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacaacacttttgataccttaagtctcatgagttagcttaaaagattaagctctctaatcaatctgtattctctcattcagTACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAACTGGAAATATGCAAGCGAGGTTTATGAGAAGGAAAACAACTGAATCGTTT
species | Arabidopsis thaliana |
transcript | AT3G10920.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACTACTTGCAG TACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAACEST: gi|116426619|gb|EG469211.1|EG469211
genomic: TACTACTTGCAGgtaacaacac ... tctcattcagTACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAAC
EST: TGGTACCTCTGGTGGGTATAGATGTTTGGGAGCACGCCTACTACTTGCAG TACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAACEST: gi|47828007|gb|CK117691.1|CK117691
genomic: TGGTACCTCTGGTGGGTATAGATGTTTGGGAGCACGCCTACTACTTGCAGgtaacaacac ... tctcattcagTACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAAC
EST: TGGTACCTCTGGTGGGTATAGATGTTTGGGAGCACGCCTACTACTTGCAG TACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAAC
genomic: TGGTACCTCTGGTGGGTATAGATGTTTGGGAGCACGCCTACTACTTGCAGgtaacaacac ... tctcattcagTACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAAC
catgagttagcttaaaagattaagctctctaatcaatctgtattctctcattcagTACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAACTGGAAATATGCAAGCGAGGTTTATGAGAAGGAAAACAACTGAATCGTTT
ctctaat putative branch site (score: 3)
ttctctcattc putative PPT
ttaaaagattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaacacttttgataccttaagtctcatgagttagcttaaaagattaagctctctaatcaatctgtattctctcattcagTACAAAAATGTGAGGCCTGAGTATCTGAAGAATGTATGGAAAGTGATCAACTGGAAATATGCAAGCGAGGTTTATGAGAAGGAAAACAACTGAATCGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA