1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaaaaaatcaacagcttcattatgtcttttgagttcttaactcataaaaatggatgcctataaactgaataatccgctattcatttcttatggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGAAGATACAACAGAAGTTAGCATGGGCCCGTCAACAGCGCCAAGCAGATC
species | Arabidopsis thaliana |
transcript | AT3G10850.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|125317870|gb|EL331955.1|EL331955
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: TACCTAAACCGACACAGG-TTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|86023772|gb|DR319525.1|DR319525
genomic: TACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAAEST: gi|125324817|gb|EL338897.1|EL338897
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAA
EST: GGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|124840531|gb|EH924970.1|EH924970
genomic: GGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGA- TACACCGTTAAGAACTTGGAATTTGEST: gi|124846207|gb|EH930644.1|EH930644
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTG
EST: CTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|19742495|gb|AU227848.1|AU227848
genomic: CTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: CTGCGCCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTTTGGAACGAAACAACGGGEST: gi|125100227|gb|EL155761.1|EL155761
genomic: CTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: CACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|124918016|gb|EH991890.1|EH991890
genomic: CACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: CTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|124935905|gb|EL012853.1|EL012853
genomic: CTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: ACACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|86027936|gb|DR323689.1|DR323689
genomic: ACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: TGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|164155464|gb|ES136586.1|ES136586
genomic: TGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: GACTCTGGCTGCATTACCTAAACCGTACACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|125034538|gb|EL106807.1|EL106807
genomic: GACTCTGGCTGCATTACCTAAACCG-ACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: ACCTAAACCGACACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|86076505|gb|DR372262.1|DR372262
genomic: ACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|124846601|gb|EH931038.1|EH931038
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCNTGAG TACACCGTTAAGAACTTGGAATTTGCTCTEST: gi|125203437|gb|EL218391.1|EL218391
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCT
EST: GACACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGEST: gi|124812364|gb|EH897230.1|EH897230
genomic: GACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
EST: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG TAACAACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAEST: gi|86078227|gb|DR373984.1|DR373984
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTA-CA-CCGTTAAGAACTTGGAATTTGCTCTAACTGTGGA
EST: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAG TACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
genomic: TGACTCTGGCTGCATTACCTAAACCGACACAGGTTTACTGCGGCCATGAGgtaaaaaaat ... tggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGG
aaaaatggatgcctataaactgaataatccgctattcatttcttatggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGAAGATACAACAGAAGTTAGCATGGGCCCGTCAACAGCGCCAAGCAGATC
tttcttat CT-rich tract
tataaactgaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaaatcaacagcttcattatgtcttttgagttcttaactcataaaaatggatgcctataaactgaataatccgctattcatttcttatggttctcagTACACCGTTAAGAACTTGGAATTTGCTCTAACTGTGGAACCAAACAACGGGAAGATACAACAGAAGTTAGCATGGGCCCGTCAACAGCGCCAAGCAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT