Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtgcttgttttgtaattggaagtttaagatcaatcgcttgctacgctatgcgtctctcatatcatttacattcttttgatatatttcagAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAATGCCTTCTTATCTCCAACCTGATACAGAAACTGATTACGATAGCGAGCT

Basic information

species Arabidopsis thaliana
transcript AT3G10640.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10640.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA10G33960.1 (Glycine max), 3'ss of exon 5
----------------------------------------------------------------------------------------------gtaaagtgcttgttttgtaattggaa--gtttaagatcaatcgcttgctacgctatgcgtctctcatatcatttacattcttttgatatatttcagAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAATGCCTTCTTATCTCCAACCTGATACAGAAACTGATTACGATAGCGAGCT
                                                                                              ||    |  |     ||| ||   ||  ||||    |   |  | ||   || | ||  |  |   | || ||    ||   ||    ||   |||| ||||| ||  | |||   ||||||||||| ||||| ||||| |||||  | || || |||||||||||||||| |||| ||||||  |||   || ||
gtatgttaaaaatttggttaggaagcttgagatatttgttggaaatcattttcaaaaactcctagctaacatggctccatagttgggcagggtagtgggattttgtggctgtgatgaaaattgttttttgttgttgtcatgaagcggtttgaatgacatgtttctttattttttggttttggtaaaacagAACTTGACGCATTGGAATTAGACATGGGAAATGAGACTGAAGCTGATGGGGTCCCATCCTATCTCCAACCTGATAAAGAACCTGATTTGGATGCAGAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19741575|gb|AU226928.1|AU226928
EST:     TAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCATGGGAG                         AGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAA
genomic: TAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCATGGGAGgtaaagtgct ... tatatttcagAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcttgctacgctatgcgtctctcatatcatttacattcttttgatatatttcagAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAATGCCTTCTTATCTCCAACCTGATACAGAAACTGATTACGATAGCGAGCT
                                       ttttgat  putative branch site (score: 4)
                        atatcatttacattct  TA-rich tract