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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacagttttcttctctctgtttgaccttcagcatttagattccacgactactctttcactcatattcattctatttctgttatacagGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCTTCTCATCTCCAGTAGCAAAATAAATCGAAAACTAAACTCTCTGTTTTAA

Basic information

species Arabidopsis thaliana
transcript AT3G10620.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072998|gb|DR368755.1|DR368755
EST:     CTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAAT                         GCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT
genomic: CTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAATgtacgtacag ... tgttatacagGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT
EST: gi|164113135|gb|ES115537.1|ES115537
EST:     TTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAAT                         GCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT
genomic: TTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAATgtacgtacag ... tgttatacagGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT
EST: gi|124797203|gb|EH886882.1|EH886882
EST:     GGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAAT                         GCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT
genomic: GGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAAAATgtacgtacag ... tgttatacagGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttagattccacgactactctttcactcatattcattctatttctgttatacagGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCTTCTCATCTCCAGTAGCAAAATAAATCGAAAACTAAACTCTCTGTTTTAA
                                ttcattctatttct  CT-rich tract
                             atattcattctattt  TA-rich tract