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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaactctcttacttcctcttagtgttgttctctttccattagtaactggtcctaagtggtaacctaagatctcttgttatcagTCAATGCGGAGGCAGTGGTGAAAGGAACAAACGTTGATGGTGTTTATGACTGTCATTCACAAGATAGTAACGTGACATTTGAGCACATATCATTTCAAGA

Basic information

species Arabidopsis thaliana
transcript AT3G10030.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125042470|gb|EL114739.1|EL114739
EST:     CCCTTCGAGCTATAGACA                         TCAATGCGGAGGCAGTGGTGAAAGGAACAAACGTTGATGGTGTTTATGACT
genomic: CCCTTCGAGCTATAGACAgtacaactct ... ttgttatcagTCAATGCGGAGGCAGTGGTGAAAGGAACAAACGTTGATGGTGTTTATGACT
EST: gi|116425761|gb|EG468353.1|EG468353
EST:     AAATCCACTTTTATCATCTGATGCATCTGCAGCCCTTCGAGCTATAGACA                         TCAATGCGGAGGCAGTGGTGAAAGGAACAAACGTTGATGGTGTTTATGACT
genomic: AAATCCACTTTTATCATCTGATGCATCTGCAGCCCTTCGAGCTATAGACAgtacaactct ... ttgttatcagTCAATGCGGAGGCAGTGGTGAAAGGAACAAACGTTGATGGTGTTTATGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctttccattagtaactggtcctaagtggtaacctaagatctcttgttatcagTCAATGCGGAGGCAGTGGTGAAAGGAACAAACGTTGATGGTGTTTATGACTGTCATTCACAAGATAGTAACGTGACATTTGAGCACATATCATTTCAAGA
                                         tctcttgtt  CT-rich tract
         attagtaa  TA-rich tract