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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttggtttacttaatctctgaatattaatttgtaaagtacttttaccccttcttttaactccattaatcttctgcagATGGCAGTTGAGCAGAATTTCACGAAAGGCCGCAGAACTGAACTAGTACAGGCTTCCTGCCTCTACTTGACGTGCAG

Basic information

species Arabidopsis thaliana
transcript AT3G09360.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116470045|gb|EG512637.1|EG512637
EST:     TTGGTGATGAGAGAGATGATGTGATTGTCATCGCAGCTAAATTCTTTGAA                         ATGGCAGTTGAGCAGAATTTCACGAAAGGCCGCAGAACTGAACTAGTACAG
genomic: TTGGTGATGAGAGAGATGATGTGATTGTCATCGCAGCTAAATTCTTTGAAgtatggttgg ... tcttctgcagATGGCAGTTGAGCAGAATTTCACGAAAGGCCGCAGAACTGAACTAGTACAG
EST: gi|116470046|gb|EG512638.1|EG512638
EST:     TTGGTGATGAGAGAGATGATGTGATTGTCATCGCAGCTAAATTCTTTGAA                         ATGGCAGTTGAGCAGAATTTCACGAAAGGCCGCAGAACTGAACTAGTACAG
genomic: TTGGTGATGAGAGAGATGATGTGATTGTCATCGCAGCTAAATTCTTTGAAgtatggttgg ... tcttctgcagATGGCAGTTGAGCAGAATTTCACGAAAGGCCGCAGAACTGAACTAGTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattaatttgtaaagtacttttaccccttcttttaactccattaatcttctgcagATGGCAGTTGAGCAGAATTTCACGAAAGGCCGCAGAACTGAACTAGTACAGGCTTCCTGCCTCTACTTGACGTGCAG
                                             tcttctgc  CT-rich tract
     atttgtaaa  TA-rich tract