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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttttgctttctagtaagaaatgatagagctttgacattttctcactttaactttttttaatcgaagttctcacatcctattcttacttctggtttatgtgtgcagTGGTTGCCCTCAATTATGCTAATTTTGTCAATAGCCTCAAGCTTCTTCACACTAGATTCAGCAGCATATCTTCCCACTTTGATATTTGGTACATATATGG

Basic information

species Arabidopsis thaliana
transcript AT3G07950.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501412|gb|HO206952.1|HO206952
EST:     AGCAGATAATACCTGACCAGGAGATATTGCTGTTAAAGATAAAAACAAAG                         TGGTTGCCCTCAATTATGCTAATTTTGTCAATAGCCTCAAGCTTCTT
genomic: AGCAGATAATACCTGACCAGGAGATATTGCTGTTAAAGATAAAAGCAAAGgtaatgtttt ... atgtgtgcagTGGTTGCCCTCAATTATGCTAATTTTGTCAATAGCCTCAAGCTTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttaatcgaagttctcacatcctattcttacttctggtttatgtgtgcagTGGTTGCCCTCAATTATGCTAATTTTGTCAATAGCCTCAAGCTTCTTCACACTAGATTCAGCAGCATATCTTCCCACTTTGATATTTGGTACATATATGG
                             ttcttac  putative branch site (score: 2)
                           tattctta  TA-rich tract