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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttctgtaactttcttaatccagtgctatcattcgacttggaactgtgcttttgtggctttatggaactattcatgtttgtgttagGGAAACTTGTGAGGCTGCTCTTAATCAACAACGTGCTTTAGATATGTCTCGAACAGAAGAGTCCTCAGACGAAGCATATACTGCCCATACTGAGCGTTTG

Basic information

species Arabidopsis thaliana
transcript AT3G07370.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124947691|gb|EL023512.1|EL023512
EST:     GAGTGGGAACTGGTTTCNGCAATGCGGTCATGGGAACTGAATAGTTTGAA                         GGAAACCTTGTGAGGCTGCTCTTAATCAACAACGTGCTTTAG
genomic: GAGTGGGAACTGGTTTCTGCAATGCGGTCATGGGAACTGAATAGTTTGAAgtaggttctg ... tttgtgttagGGAAAC-TTGTGAGGCTGCTCTTAATCAACAACGTGCTTTAG
EST: gi|124937799|gb|EL014504.1|EL014504
EST:     GAGTGGGAACTGGTTTCTGCAATGCGGTCATGGGAACTGAATAGTTTGAA                         GGAAACTTGTGAGGCTGACTCTTAATCAACAACGTGCTTTAGATATG
genomic: GAGTGGGAACTGGTTTCTGCAATGCGGTCATGGGAACTGAATAGTTTGAAgtaggttctg ... tttgtgttagGGAAACTTGTGAGGCTG-CTCTTAATCAACAACGTGCTTTAGATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgacttggaactgtgcttttgtggctttatggaactattcatgtttgtgttagGGAAACTTGTGAGGCTGCTCTTAATCAACAACGTGCTTTAGATATGTCTCGAACAGAAGAGTCCTCAGACGAAGCATATACTGCCCATACTGAGCGTTTG
                                  aactatt  TA-rich tract