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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaccgtcacaacatttatagtaattttaattgacaattattgtaataataattacttttttgtctttgtgaaccaatcgtgtgtttgtttaaactaatttcttttgttttctgacagATATTTCCTTCAAGCAACAATCTAATGCATCATCAACAAGTACTTCAATTAGATTCTTCAGCAGAAACGTTATTGGGTGATCATCACAACAAAAATTTGC

Basic information

species Arabidopsis thaliana
transcript AT3G07340.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073407|gb|DR369164.1|DR369164
EST:     CAGTGAACACCAGGCTGGACTTTAACATGGACGCTCTCTTGTCTAAGGAT                         ATTTTTCCTTCAAGCAGCAATCTAATGCATCATCAACAAGTACTTCAATTA
genomic: CAGTGAACACCAGGCTGGACTTTAACATGGACGCTCTCTTGTCTAAGGATgtaagtcacc ... tttctgacagATATTTCCTTCAAGCAACAATCTAATGCATCATCAACAAGTACTTCAATTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgtgaaccaatcgtgtgtttgtttaaactaatttcttttgttttctgacagATATTTCCTTCAAGCAACAATCTAATGCATCATCAACAAGTACTTCAATTAGATTCTTCAGCAGAAACGTTATTGGGTGATCATCACAACAAAAATTTGC
                             aactaat  putative branch site (score: 2)
                                   tttcttttgttttct  CT-rich tract
                     tttgtttaaactaatt  TA-rich tract