1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagttctacactctcttttacatgcttgacatggcgatataatgtttttttagtctaaagttctttacatatgcagGTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATTGTCCCAATGATTCTCGAAACCAAAGACAGGAGGGTGCTTGCAAAGTATACTA
species | Arabidopsis thaliana |
transcript | AT3G06950.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAAGTCAGAAACATG GTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATTGTCEST: gi|19743143|gb|AU228496.1|AU228496
genomic: AGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAAGTCAGAAACATGgttagttcta ... acatatgcagGTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATTGTC
EST: AGCTTGAAGTTGAAGTTTCTGGCTTTTTGTACAGACAAGTCAGAAACATG GTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATTGTCEST: gi|116425548|gb|EG468140.1|EG468140
genomic: AGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAAGTCAGAAACATGgttagttcta ... acatatgcagGTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATTGTC
EST: AGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAAGTCAGAAACATG GTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGGCATTGTC
genomic: AGCTTGAAGTTGAAGGTTCTGGCTTTTTGTACAGACAAGTCAGAAACATGgttagttcta ... acatatgcagGTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATTGTC
atgcttgacatggcgatataatgtttttttagtctaaagttctttacatatgcagGTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATTGTCCCAATGATTCTCGAAACCAAAGACAGGAGGGTGCTTGCAAAGTATACTA
gtctaaa putative branch site (score: 3)
ttctttac CT-rich tract
atataatgttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttctacactctcttttacatgcttgacatggcgatataatgtttttttagtctaaagttctttacatatgcagGTAGCTTTGCTGATTCAGATTGGAAAAGAAGCACTGGATTCAGACATTGTCCCAATGATTCTCGAAACCAAAGACAGGAGGGTGCTTGCAAAGTATACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG