Sequence
atgc intronic sequence ATGC exonic sequencegttttgacacttaaccttctataagagtctgtatctcttccatagcataatatcaagggcaggaatggatttaactatttatattctgtcagGCACTTCTCTCCGGATGCTCTGCTGGTGGTTTAGCAGCAATCTTGCGCTGCGATGAGTTTAGGAACTTATTCCCTGGATCAACCAAAGTCAAGTGCTTGA
Basic information
species | Arabidopsis thaliana |
transcript | AT3G05910.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G05910.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os07g44070.2 (Oryza sativa), 3'ss of exon 5
gttttgacacttaaccttctataagagtctgtatctcttccatagcataatatcaagggcaggaatggatttaactatttata------ttctgtcagGCACTTCTCTCCGGATGCTCTGCTGGTGGTTTAGCAGCAATCTTGCGCTGCGATGAGTTTAGGAACTTATTCCCTGGATCAACCAAAGTCAAGTGCTTGA
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------gtactgatccttccacagctaatcatgttttctttagccttttggattttggaaataatttatgtttccttgccacaactcaattctaccagGCACTTCTTTCTGGATGCTCTGCTGGTGGTGTTTCAACCATACTTCACTGTGACGAGTTCCGTGGATTGTTTAGCGGCAGTACAAACGTGAAGTGCCTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125016182|gb|EL088451.1|EL088451EST: CGAATGGAATGCGATACGCCAATCAG GCACTTCTCTCCGGATGCTCTGCTGGTGGTTTAGCAGCAATCTTGCGCTGC
genomic: CGAATGGAATGCGATACGCCAATCAGgttttgacac ... attctgtcagGCACTTCTCTCCGGATGCTCTGCTGGTGGTTTAGCAGCAATCTTGCGCTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccatagcataatatcaagggcaggaatggatttaactatttatattctgtcagGCACTTCTCTCCGGATGCTCTGCTGGTGGTTTAGCAGCAATCTTGCGCTGCGATGAGTTTAGGAACTTATTCCCTGGATCAACCAAAGTCAAGTGCTTGA
atttaac putative branch site (score: 3)
ttctgtc putative PPT
aatggatttaactatt TA-rich tract