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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggtcaaaatcaactcggggtttttgtaaagtttctgaatttttcttgctcagatgaatgattttctgcatttttgaatgttttcagGTTTGGGCGGTTCTGAAACCAGGATTTTTGGCGTTACTAGAAGATCCATTCAGCGGAAAGCTTCTAGATATAATGGTGTTCGACACATTGGGGTTGCAAG

Basic information

species Arabidopsis thaliana
transcript AT3G05630.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116410846|gb|EG453438.1|EG453438
EST:     GCTGTCTTCCTACACACGGTCTCGGTTTCTTCGGAACTAGCTGGACAAAG                         GTTTGGGCGGTTCTGAAACCAGGATTTTTGGCGTTACTAGAAGATCCATTC
genomic: GCTGTCTTCCTACACACTGTCTCGGTTTCTTCGGAACTAGCTGGACAAAGgtttggtcaa ... atgttttcagGTTTGGGCGGTTCTGAAACCAGGATTTTTGGCGTTACTAGAAGATCCATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgaatttttcttgctcagatgaatgattttctgcatttttgaatgttttcagGTTTGGGCGGTTCTGAAACCAGGATTTTTGGCGTTACTAGAAGATCCATTCAGCGGAAAGCTTCTAGATATAATGGTGTTCGACACATTGGGGTTGCAAG
                                              tgttttc  CT-rich tract
                                     atttttgaatgtttt  TA-rich tract