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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagactctccgattactaaaacactaagataaaaaagcttcatctctttctgtttcaaaaggctaaaagttcggtttcagGGCAAGAAACCGGATGCATTGTACAAGGTGAAAGACCCCGAGGTTAAATGTTTCATTGAGAAATGCTTGGCCACCGTATCGCTTAGAGTCTCTGCTCGTG

Basic information

species Arabidopsis thaliana
transcript AT3G04910.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125211281|gb|EL226235.1|EL226235
EST:     CTGCTCAGATCTACAAGAAAGTTATGTCG                         GGCAAGAAACCGGATGCATTGTACAAGGTGAAAGACCCCGAGGTTAAATGT
genomic: CTGCTCAGATCTACAAGAAAGTTATGTCGgtgagactct ... tcggtttcagGGCAAGAAACCGGATGCATTGTACAAGGTGAAAGACCCCGAGGTTAAATGT
EST: gi|125011498|gb|EL083767.1|EL083767
EST:     CGTACAGTGAGTGTACTCATCCTGCTCAGATCTACAAGAAAGTTATGTCG                         GGCAAGAAACCGGATGCATTGTACAAGGTGAAAGACCCC
genomic: CGTACAGTGAGTGTACTCATCCTGCTCAGATCTACAAGAAAGTTATGTCGgtgagactct ... tcggtttcagGGCAAGAAACCGGATGCATTGTACAAGGTGAAAGACCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagataaaaaagcttcatctctttctgtttcaaaaggctaaaagttcggtttcagGGCAAGAAACCGGATGCATTGTACAAGGTGAAAGACCCCGAGGTTAAATGTTTCATTGAGAAATGCTTGGCCACCGTATCGCTTAGAGTCTCTGCTCGTG
                                   ggctaaa  putative branch site (score: 3)
                           tttcaaaa  TA-rich tract