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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggctcagttcattattctcttgctattgtgattttatcgtactgagatgtgcatattatttgtagAGCTTGATTTTCGGTTTCCTGTTGGAGCTCCAATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAG

Basic information

species Arabidopsis thaliana
transcript AT3G04870.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os07g10490.1 (Oryza sativa), 3'ss of exon 4
----------------------------gtatggctcagt--tcattattctcttgctattgtgattttatcgtactgagatgtgcatattatt-tgtagAGCTTGATTTTCGGTTTCCTGTTGGAGCTCCAATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAG
                             | | |||  ||  | ||  | | |||  | |    | |||       |  | | |||  |||  | |  ||| |||||||||||||||||||| ||||||||  | |||||||| |  |||||  |    || || |||||||||
actaagtgtgctaaactaactcaagtgtattttgctatgtatttatattccacttattttctaaactttcatactatttgctttgctaattgctatacagAACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCATTCCTACGAACTAACCAACTCAAG

upper sequence: AT3G04870.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------gtatggctca-gttcattattctcttgctattgtgattttatcgtactgagatgtgcatattatttgtagAGCTTGATTTTCGGTTTCCTGTTGGAGCTCCAATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAG
                                 |||   | |  |  |  ||||  |  | |     ||| || | || ||  |  ||  |      || ||||||||||||||||||||| ||||| || ||| | ||||| ||||| ||||||||||  |||||||| ||  ||
tttttcttttgtctgaagttgtttttgcctgaatatcagttacataaaacattccatctcaaagaatattcta-cata-tgtaacttgatttcccactgcagAGCTTGATTTTCGGTTTCCAGTTGGTGCACCATTACATGGAATTCGTGCATTTTTGGCTACAAATCAGCTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attattctcttgctattgtgattttatcgtactgagatgtgcatattatttgtagAGCTTGATTTTCGGTTTCCTGTTGGAGCTCCAATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAG
             tattgtgattttat  TA-rich tract