1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cagatggttccttttgtcaatgattcttaatcttccttgtttgatttctctcaaattgtaagtcttaaaaattcacatgtctttgttgtgaattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACCTTAAGGATCTTGTTGCTAAGTTCATTCCTGAAGCTATTGGCAGGGAGA
species | Arabidopsis thaliana |
transcript | AT3G04840.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGAEST: gi|116436618|gb|EG479210.1|EG479210
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGA
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|164233953|gb|ES145003.1|ES145003
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: GGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAACCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|124921369|gb|EH994993.1|EH994993
genomic: GGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: TCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|125112820|gb|EL163865.1|EL163865
genomic: TCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: TCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|163972009|gb|ES156360.1|ES156360
genomic: TCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG TEST: gi|163972009|gb|ES156360.1|ES156360
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcag-
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG TEST: gi|125123102|gb|EL169551.1|EL169551
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcag-
EST: AGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGAEST: gi|124940705|gb|EL017133.1|EL017133
genomic: AGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGA
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATEST: gi|125290597|gb|EL304682.1|EL304682
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACAT
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATEST: gi|86081250|gb|DR377007.1|DR377007
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACAT
EST: CTAACCAGGTCAAGAGGACTT-STACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|164075431|gb|ES153215.1|ES153215
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: GCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|125152149|gb|EL183934.1|EL183934
genomic: GCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: AGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|124869609|gb|EH954046.1|EH954046
genomic: AGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCEST: gi|125029573|gb|EL101842.1|EL101842
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATC
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGEST: gi|116425121|gb|EG467713.1|EG467713
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAG
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|86077074|gb|DR372831.1|DR372831
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: ATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|116436720|gb|EG479312.1|EG479312
genomic: ATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|125292432|gb|EL306517.1|EL306517
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: AGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|124713186|gb|EH804588.1|EH804588
genomic: AGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: CTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|163989408|gb|ES064393.1|ES064393
genomic: CTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: AAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACEST: gi|125309129|gb|EL323214.1|EL323214
genomic: AAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCEST: gi|163976319|gb|ES169499.1|ES169499
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGC
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTEST: gi|164211200|gb|ES125546.1|ES125546
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCT
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGEST: gi|164160822|gb|ES136669.1|ES136669
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAG
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAEST: gi|124824555|gb|EH909421.1|EH909421
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAA
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGEST: gi|124819556|gb|EH904422.1|EH904422
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGG
EST: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATEST: gi|164124847|gb|ES167460.1|ES167460
genomic: CTAACCAGGTCAAGAGGACTTGCTACGCTCAATCCAGCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCAT
EST: GCCAAATCCGTCAG ATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
genomic: GCCAAATCCGTCAGgtacgcacac ... aattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGAC
ttctctcaaattgtaagtcttaaaaattcacatgtctttgttgtgaattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACCTTAAGGATCTTGTTGCTAAGTTCATTCCTGAAGCTATTGGCAGGGAGA
ttcctc CT-rich tract
aaattgtaagtcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagatggttccttttgtcaatgattcttaatcttccttgtttgatttctctcaaattgtaagtcttaaaaattcacatgtctttgttgtgaattcctcagATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTCATGTGACCTTAAGGATCTTGTTGCTAAGTTCATTCCTGAAGCTATTGGCAGGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - -tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcaca