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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttcccatcttcttctatccatctataaaggggctgttttatctctagccattgtactttccttgataagctgtgtattgaaatggtttttgaatttacagCCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGT

Basic information

species Arabidopsis thaliana
transcript AT3G04820.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116462950|gb|EG505542.1|EG505542
EST:     AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAG                         CCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACT
genomic: AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGgtgtttccca ... gaatttacagCCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACT
EST: gi|116431187|gb|EG473779.1|EG473779
EST:     AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAG                         CCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACT
genomic: AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGgtgtttccca ... gaatttacagCCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACT
EST: gi|116421231|gb|EG463823.1|EG463823
EST:     AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAG                         CCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACT
genomic: AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGgtgtttccca ... gaatttacagCCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACT
EST: gi|125106890|gb|EL160279.1|EL160279
EST:     TTGGAAAGATGCTAGGCGTTCAG                         CCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACT
genomic: TTGGAAAGATGCTAGGCGTTCAGgtgtttccca ... gaatttacagCCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACT
EST: gi|116421229|gb|EG463821.1|EG463821
EST:     AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAG                         CCAAAGTCATTCGGATTCTTTGGAACAAAAGATAAGCGGTCTGTTTCTACT
genomic: AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGgtgtttccca ... gaatttacagCCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACT
EST: gi|116421230|gb|EG463822.1|EG463822
EST:     AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAG                         CCAAAGTCATTC
genomic: AAGATACACAAGAGGCCTTGGGATTGATTGGAAAGATGCTAGGCGTTCAGgtgtttccca ... gaatttacagCCAAAGTCATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccattgtactttccttgataagctgtgtattgaaatggtttttgaatttacagCCAAAGTCATTCGGATTCTCTGGAACAAAAGATAAGCGGTCTGTTTCTACTCAGCGT
              ccttgat  putative branch site (score: 5)
                                        tttttgaatttaca  TA-rich tract