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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatacggtttatctatttgcaaaaaattgttcataagagaaatagctggtttcattggaaatgacttggatttggtaaacagGAGCACCAGGGTGCATCAATGATTCAATCTTGACTGGAGTGCAATTTGTGGAAGGGTTAGAAAGTTTCTTTTTTGTGTCACGTTGGACGATGCACCAACT

Basic information

species Arabidopsis thaliana
transcript AT3G03310.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03310.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA18G47970.1 (Glycine max), 3'ss of exon 5
-------------------gtgatacggtttatctatttgcaaaaaattgttcataagagaaatagctggtttcattggaa-atgacttggatttggtaaacagGAGCACCAGGGTGCATCAATGATTCAATCTTGACTGGAGTGCAATTTGTGGAAGGGTTAGAAAGTTTCTTTTTTGTGTCACGTTGGACGATGCACCAACT
                    |  |    |||||    ||         | |||  |   |   || |         | ||| |||| ||  |  ||   ||||||||| ||||||||||||||||||||  | || |||||| |  | ||||| || || ||  |||| |  |||||||||  | | ||||| ||||| |||  
caaatgttaagagcttaggatactttcctttatactattcttttttccttttcccagatgtcttaaccatccatgcttgaatatgaattacacatg---aacaGGAGCCCCAGGGTGCATCAATGATTCTTTATTAACTGGATTAGAGTTTGTTGATGGCTTTCAAAGCTATTTTTTTGTGAAAAGGTGGACTATGCATCAAT-

upper sequence: AT3G03310.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv04s0023g00940.t01 (Vitis vinifera), 3'ss of exon 5
-------------gtgatacggtttatctatttgcaaaa----aattgttcataagagaaatagctggtttcattggaaatgacttggatttggtaaacagGAGCACCAGGGTGCATCAATGATTCAATCTTGACTGGAGTGCAATTTGTGGAAGGGTTAGAAAGTTTCTTTTTTGTGTCACGTTGGACGATGCACCAACT
                 | |  ||   | ||||          | || |||         |  |     || | |   |||  ||   || || | |||||| |||||||| |||||||||| |||  | ||||||||| |||||||||| || || || ||||| ||||||||||| |   | ||||| ||||| |||||
tttcaagacctgaaaagttccattccaccatttatgctgtttcagtttttcccctctatgagtgtatacttgaatatcaatt-ctgaaatatgcttaacagGTGCACCAGGATGCATCAATGGTTCTCTTTTGACTGGATTGCAATTTGTTGATGGCTTGGAAAGCTTCTTTTTTGTATTGAGGTGGACAATGCATCAACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcataagagaaatagctggtttcattggaaatgacttggatttggtaaacagGAGCACCAGGGTGCATCAATGATTCAATCTTGACTGGAGTGCAATTTGTGGAAGGGTTAGAAAGTTTCTTTTTTGTGTCACGTTGGACGATGCACCAACT
          agaaata  TA-rich tract