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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttctaaacaacattgcttatactcttcagactttatatgacttggttttgatttctgtcgagtgtttctcggggtttccatttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTACAGAAATTTACAGCAGAACGAGACAATAGAGTCAGGCTCTCAGTCTCAAG

Basic information

species Arabidopsis thaliana
transcript AT3G02830.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116469197|gb|EG511789.1|EG511789
EST:     TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT                         GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
genomic: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
EST: gi|116473654|gb|EG516246.1|EG516246
EST:     TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT                         GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
genomic: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
EST: gi|116473653|gb|EG516245.1|EG516245
EST:     TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT                         GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
genomic: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
EST: gi|116473655|gb|EG516247.1|EG516247
EST:     TCAAGGATGGAACCCTTACAGT                         GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
genomic: TCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
EST: gi|124916504|gb|EH990378.1|EH990378
EST:     TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT                         GGTCAGCTCGG
genomic: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGG
EST: gi|86037522|gb|DR333277.1|DR333277
EST:     AGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT                         GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
genomic: AGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
EST: gi|116473656|gb|EG516248.1|EG516248
EST:     TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGT                         GGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC
genomic: TAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGATGGAACCCTTACAGTgtaagttttc ... atttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgacttggttttgatttctgtcgagtgtttctcggggtttccatttcgttagGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAAAACTACAGAAATTTACAGCAGAACGAGACAATAGAGTCAGGCTCTCAGTCTCAAG
           ttttgat  putative branch site (score: 4)
                                        tttccatttc  putative PPT
           ttttgattt  TA-rich tract