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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgatgatgtttctctctctctcctccagtttctatttatagatggaaactttaaatagtccaatttatatatatgagtctaaatttcacattcttcaactgctacatgtttcttttgtattatttctatgatatcttcaggaaagtttgaaaaatattgtgttttgtttagCTGGAAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGGATGGGAAGGTGGTGATCAACAGAATATTGCCTATGGACATCCTCAGGCTCATTCTC

Basic information

species Arabidopsis thaliana
transcript AT3G02310.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164164650|gb|ES178271.1|ES178271
EST:     TATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAG                         CTGGAAGATATGATCGGCGTGAGAACATCACCATATAGGAGGAGGATGGGA
genomic: TATCTTGCTTGATGCCAACAGAGCTTTGTCAATGAAGgtatatgatg ... ttttgtttagCTGGAAGATATGATCGGCGTGAGA-CATCACCATATAGGAGGAGGATGGGA
EST: gi|164228546|gb|ES198485.1|ES198485
EST:     CTTTGTCAATGAAG                         CTGGAAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGGATGGGAA
genomic: CTTTGTCAATGAAGgtatatgatg ... ttttgtttagCTGGAAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGGATGGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattatttctatgatatcttcaggaaagtttgaaaaatattgtgttttgtttagCTGGAAGATATGATCGGCGTGAGACATCACCATATAGGAGGAGGATGGGAAGGTGGTGATCAACAGAATATTGCCTATGGACATCCTCAGGCTCATTCTC
                                             ttttgttt  CT-rich tract
                                 aaaaatattgtgtttt  TA-rich tract