Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   
17  
 5'  3'   
18  
 5'  3'   
19  
 5'  3'   
20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggatagattattgattattacgcaaagttagcacttccaaaccctgcttctctgaaatctagtcgttttttgtctggttaagGTGGTGGAGAGTTCTTTATATCTACGCAGGATTCAACATTGTCCTGCTTTACCTCTATCAACTACCAATAAACTTTTCCGATATGATTCGTTGGATAGCA

Basic information

species Arabidopsis thaliana
transcript AT2G48060.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402574|gb|EG445166.1|EG445166
EST:     GCCGGTCTTGTGGACTGGTCCTTGACAAGCAATGTTTCAGGACTTTTCAA                         GTGGTGGAGAGTTCTTTATATCTACGCAGGATTCAACATTGTCCTGCTTTA
genomic: GCCGGTCTTGTGGACTGGTCCTTGACAAGCAATGTTTCAGGACTTTTCAGgtggatagat ... tctggttaagGTGGTGGAGAGTTCTTTATATCTACGCAGGATTCAACATTGTCCTGCTTTA
EST: gi|116402648|gb|EG445240.1|EG445240
EST:     GCCGGTCTTGTGGACTGGTCCTTGACAAGCAATGTTTCAGGACTTTTCAG                         GTGGTGGAGAGTTCTTTATATCTACGCAGGATTCAACATTGTCCTGCTTTA
genomic: GCCGGTCTTGTGGACTGGTCCTTGACAAGCAATGTTTCAGGACTTTTCAGgtggatagat ... tctggttaagGTGGTGGAGAGTTCTTTATATCTACGCAGGATTCAACATTGTCCTGCTTTA
EST: gi|116402577|gb|EG445169.1|EG445169
EST:     GCCGGTCTTGTGGACTGGTCCTTGACAAGCAATGTTTCAGGACTTTTCAG                         GTGGTGGAGAGTTCTTTATATCTACGCAGGATTCAACATTGTCCTGCTTTA
genomic: GCCGGTCTTGTGGACTGGTCCTTGACAAGCAATGTTTCAGGACTTTTCAGgtggatagat ... tctggttaagGTGGTGGAGAGTTCTTTATATCTACGCAGGATTCAACATTGTCCTGCTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagcacttccaaaccctgcttctctgaaatctagtcgttttttgtctggttaagGTGGTGGAGAGTTCTTTATATCTACGCAGGATTCAACATTGTCCTGCTTTACCTCTATCAACTACCAATAAACTTTTCCGATATGATTCGTTGGATAGCA
                                      ttttttgtct  CT-rich tract
 ttttttgt  TA-rich tract