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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatttcttaattattttggtttaggggttcgatatgatttatttctttcatttgctcgtatatatatgctttgtggacagATTGCGTGGCCTAGAAGTCTAAGAACGACGACATCGTACAAGAGCAATCTCTGGATCTATTGTTCTACTCCCTATAATATATGTGATTTTTTTGTTCTTA

Basic information

species Arabidopsis thaliana
transcript AT2G46640.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402744|gb|EG445336.1|EG445336
EST:     AACTCGGAACTGTGAAGCTCTCGAGTCACATTATCTTCTTAAAATTCAAG                         ATTGCGTGGCCTAGAAGTCTAAGAACGACGACATCGTACAAGAGCAATCTC
genomic: AACTCGGAACTGTGAAGCTCTCGAGTCACATTATCTTCTTAAAATTCAAGgtttgtattt ... ttgtggacagATTGCGTGGCCTAGAAGTCTAAGAACGACGACATCGTACAAGAGCAATCTC
EST: gi|116402741|gb|EG445333.1|EG445333
EST:     AACTCGGAACTGTGAAGCTCTCGAGTCACATTATCTTCTTAAAATTCAAG                         ATTGCGTGGGCCTAGAAGTCTAAGAACGACGACATCGTACAAGAGCAATCT
genomic: AACTCGGAACTGTGAAGCTCTCGAGTCACATTATCTTCTTAAAATTCAAGgtttgtattt ... ttgtggacagATTGCGTGG-CCTAGAAGTCTAAGAACGACGACATCGTACAAGAGCAATCT
EST: gi|116402746|gb|EG445338.1|EG445338
EST:     AACTCGGAACTGTGAAGCTCTCGAGTCACATTATCTTCTTAAAATTCAAG                         ATTGCGGGGCCTAGAAGTCTAAGAACGACGACATCGTACAAGAGCAATCTC
genomic: AACTCGGAACTGTGAAGCTCTCGAGTCACATTATCTTCTTAAAATTCAAGgtttgtattt ... ttgtggacagATTGCGTGGCCTAGAAGTCTAAGAACGACGACATCGTACAAGAGCAATCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttcgatatgatttatttctttcatttgctcgtatatatatgctttgtggacagATTGCGTGGCCTAGAAGTCTAAGAACGACGACATCGTACAAGAGCAATCTCTGGATCTATTGTTCTACTCCCTATAATATATGTGATTTTTTTGTTCTTA
      atatgatttatttctt  TA-rich tract