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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagctcttcttcttggcttatctttaatctaaaactgttgtagatttaagttgagagtgatatgttattcccctgtttttgcagAACGAAAACCGGACTCTATGGAAACTAGGAACATTGCCACCAGGGCTCATAACGTTCTACAATCTGACACAACCACTTCAGAGAAAATGGCACTTACTTG

Basic information

species Arabidopsis thaliana
transcript AT2G46480.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46480.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G147145_T02 (Zea mays), 3'ss of exon 5
----------------gtcagctcttcttcttggcttatct-ttaatctaaaactgttgtagatttaagttgagagtgatatgttattcccctgtttttgcagAACGAAAACCGGACTCTATGGAAACTAGGAACATTGCCACCAGGGCTCATAACGTTCTACAATCTGACACAACCACTTCAGAGAAAATGGCACTTACTTG
                    || || | |   |   || || | | |  | |  |    |  | |  | ||        | |  | ||| |   ||| | |||||||| ||| ||   || |||||||| || |||||||||||||||||  |||| || ||||| |||||||| || ||  | | |  ||||||  | ||||
gtgctagtcgaaacataaatgcactgcctggagatgtacctatcagtgcatacattaactgaactccattttcacactgttttctgttctc---tttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAACTTTTTACAAGCTGACACACCCTCTGGACAAATCATGGCATGTGCTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaactgttgtagatttaagttgagagtgatatgttattcccctgtttttgcagAACGAAAACCGGACTCTATGGAAACTAGGAACATTGCCACCAGGGCTCATAACGTTCTACAATCTGACACAACCACTTCAGAGAAAATGGCACTTACTTG
 atctaaa  putative branch site (score: 3)
                                   ttattcccctgttttt  putative PPT
                              atatgttatt  TA-rich tract