1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gcatgtgcttctttcttttacttgtttcaaaaatatgctctatacatattacatatagagataaatcatctaatagagtgttctttttgttgattctttcagCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCACTGTGGTGCCTGTAAATGCTGTCGCCATGTCTCCACTTCTCAACCAT
species | Arabidopsis thaliana |
transcript | AT2G46290.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAG CTTTGGGACATGAGAACGCTGACTCTTATTAAGAEST: gi|116426847|gb|EG469439.1|EG469439
genomic: CAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAGgcatgtgctt ... attctttcagCTTTGGGACATGAGAACGCTGACTCTTATTAAGA
EST: CAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAG CTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCACTGTGGTGEST: gi|116426849|gb|EG469441.1|EG469441
genomic: CAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAGgcatgtgctt ... attctttcagCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCACTGTGGTG
EST: AGCTGATGACTCTCACTTCCTTACAGGGTTCACATGACAAAACTGCAAAG CTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCACTGTEST: gi|116426850|gb|EG469442.1|EG469442
genomic: AGCTGATGACTCTCACTTCCTTACAGG-TTCACATGACAAAACTGCAAAGgcatgtgctt ... attctttcagCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCACTGT
EST: CAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAG CTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCACTGTGGTGEST: gi|164078181|gb|EL991558.1|EL991558
genomic: CAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAGgcatgtgctt ... attctttcagCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCACTGTGGTG
EST: CAGCTGATGACTCTCACTTCCTTACAGGTTCACTTGACAAAACTGCAAAG CTTTGGGACATGAGAACGCTGACTCTT
genomic: CAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAGgcatgtgctt ... attctttcagCTTTGGGACATGAGAACGCTGACTCTT
attacatatagagataaatcatctaatagagtgttctttttgttgattctttcagCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCACTGTGGTGCCTGTAAATGCTGTCGCCATGTCTCCACTTCTCAACCAT
ttctttc CT-rich tract
ataaatcatctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtgcttctttcttttacttgtttcaaaaatatgctctatacatattacatatagagataaatcatctaatagagtgttctttttgttgattctttcagCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCACTGTGGTGCCTGTAAATGCTGTCGCCATGTCTCCACTTCTCAACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG