1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctttcactgatactctctaaacaattaccgcaaatccataacgctatcactccgtgcaaatcttgttttcttatgatttcaaacctttttgtattgctagGCGCTCTTCCGCAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCTTCAACAAAGCAAGAGGATATGGTTGATGTCAATCTCAAGTCTTCCAATG
species | Arabidopsis thaliana |
transcript | AT2G44610.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTAATGTAATGTTCATCGAAACCAGTGTCAAAGCGGGCTTCAACATTAAG GCGCTCTTCCGCAAGATAGCAGCAGCTTTGCCGGGAAEST: gi|116467570|gb|EG510162.1|EG510162
genomic: TTAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTCAACATTAAGgtaacaaaga ... gtattgctagGCGCTCTTCCGCAAGATAGCAGCAGCTTTGCCGGGAA
EST: TTAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTCAACATTAAG GCGCTCTTCCGCAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCTEST: gi|125280206|gb|EL294291.1|EL294291
genomic: TTAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTCAACATTAAGgtaacaaaga ... gtattgctagGCGCTCTTCCGCAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCT
EST: TTAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTCAACATTAAG GCGCTCTTCCGCAAGATAGCAGCAGCTTTGCCEST: gi|125006906|gb|EL079175.1|EL079175
genomic: TTAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTCAACATTAAGgtaacaaaga ... gtattgctagGCGCTCTTCCGCAAGATAGCAGCAGCTTTGCC
EST: TAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTTACAACATTAAG GCGCTCTTCCGCAAGATAEST: gi|164065700|gb|ES100516.1|ES100516
genomic: TAATGTAATGTTCATCGAAACCAGTGCCAAAGCGGGCTT-CAACATTAAGgtaacaaaga ... gtattgctagGCGCTCTTCCGCAAGATA
EST: GAAACCAGTGCCAAAGCGGGCTTCAACATTAAG GCGCTCTTCCGCAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCT
genomic: GAAACCAGTGCCAAAGCGGGCTTCAACATTAAGgtaacaaaga ... gtattgctagGCGCTCTTCCGCAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCT
atcactccgtgcaaatcttgttttcttatgatttcaaacctttttgtattgctagGCGCTCTTCCGCAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCTTCAACAAAGCAAGAGGATATGGTTGATGTCAATCTCAAGTCTTCCAATG
cctttttgt CT-rich tract
ttttcttatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttcactgatactctctaaacaattaccgcaaatccataacgctatcactccgtgcaaatcttgttttcttatgatttcaaacctttttgtattgctagGCGCTCTTCCGCAAGATAGCAGCAGCTTTGCCGGGAATGGAGACATTGTCTTCAACAAAGCAAGAGGATATGGTTGATGTCAATCTCAAGTCTTCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - ctgatac
- - - - - - - - ctaaaca
- - - - - - - - - - - - - - - -aaatcca
- - - - - - - - - - - - - - - - - - - - - - - -cactccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacct