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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcaactgtgaaattgattccattatctctgttatgctcgactcgtatttgtacttgacctttctgacgtattgctataatctgatgacagGTACATTCCATCTCTCGTAGCCACATTCACTTTTCCTCAGAGCGTGGGGATTTTGGGTGGCAAACCAGGTGCCTCAACTTACATAGTTGGTGTTCAAGAA

Basic information

species Arabidopsis thaliana
transcript AT2G44140.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G44140.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os04g58560.1 (Oryza sativa), 3'ss of exon 5
---------------------------gtttgcaactgtgaaattgattccattatctctgttatgct-cgactcgtatttgtacttgacctttctgacgtattgctataatc--tgatgacagGTACATTCCATCTCTCGTAGCCACATTCACTTTTCCTCAGAGCGTGGGGATTTTGGGTGGCAAACCAGGTGCCTCAACTTACATAGTTGGTGTTCAAGAA
                            |||| |    | | || |   || ||       | ||| | | |||  |  ||||   |    ||  | || |  ||| ||   |  |  |  |||||||||||| |  ||    |  || ||||| |||||||||||| |||||||||||||||| || || ||  | ||||| ||||| | ||| || || || 
gtaagcagcaagctattaaatctcattctttgtaggcttcatatggtcacccttgaacggttgatgtttctactgatggttgtttctagtattaatcacttcctgccattgcccttactatcagGTACATTCCTTTACTAAAGGAGACGTTCACATTTCCTCAGAGCTTGGGGATTTTGGGTGGAAAGCCTGGAACATCAACCTACATTGCTGGGGTACAGGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgactcgtatttgtacttgacctttctgacgtattgctataatctgatgacagGTACATTCCATCTCTCGTAGCCACATTCACTTTTCCTCAGAGCGTGGGGATTTTGGGTGGCAAACCAGGTGCCTCAACTTACATAGTTGGTGTTCAAGAA
         tatttgta  TA-rich tract