1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaagttcctgatcattgtggaaaaaaaacaaaggggcctgtttagtcttctgttgaattgatttagtcttctgttggttttacacagATTTTAAACGACAACAGAGCTAACTGTAAGTGTATGAACAAGGAGAAGAAGTCAATATAGGGCGCAACAAAGTGTGTAGTAGATAGGACTAAAAAGCAGG
species | Arabidopsis thaliana |
transcript | AT2G42280.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGGATTTAGGCTGTGGATTACATCAAAGATTTACAAAGACAGTATAAG ATTTTAAACGACAACAGAGCTAACTCTAAGTGTATGAACAAGGAGAAGAAG
genomic: GTTGGATTTA-GCTGTGGATTACATCAAAGATTTACAAAGACAGTATAAGgtaaagttcc ... ttttacacagATTTTAAACGACAACAGAGCTAACTGTAAGTGTATGAACAAGGAGAAGAAG
ggggcctgtttagtcttctgttgaattgatttagtcttctgttggttttacacagATTTTAAACGACAACAGAGCTAACTGTAAGTGTATGAACAAGGAGAAGAAGTCAATATAGGGCGCAACAAAGTGTGTAGTAGATAGGACTAAAAAGCAGG
aattgat putative branch site (score: 4)
aattgattta TA-rich tract