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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagttgtcacaaccagagacctaagttgttcatattgttttcctatttagtttttttgctcttagagtgagtatgatttgctactagaccaatccatctaattttttacctttagtgattgacaactcttggaaagtttgtgcaaggtgaaagtgaaaccttatgttcgaaatcaattgtttttgttagATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATTCTCTACTGACTTTAAAGAG

Basic information

species Arabidopsis thaliana
transcript AT2G40600.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116425484|gb|EG468076.1|EG468076
EST:     AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGG                         ATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATT
genomic: AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGgtaaagttgt ... tttttgttagATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATT
EST: gi|164221891|gb|ES063061.1|ES063061
EST:     GTGGGATTTACGG                         ATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATT
genomic: GTGGGATTTACGGgtaaagttgt ... tttttgttagATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATT
EST: gi|125078783|gb|EL141036.1|EL141036
EST:     AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGG                         ATATCCTTTTGATGAAGCTGCTGCGAT
genomic: AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGgtaaagttgt ... tttttgttagATATCCTTTTGATGAAGCTGCTGCGAT
EST: gi|164154530|gb|ES045671.1|ES045671
EST:     AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGG                         ATATCCTTTTGA
genomic: AACAATATCAAATACATTGCATTTCCTGCCATATCTTGTGGGATTTACGGgtaaagttgt ... tttttgttagATATCCTTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttgtgcaaggtgaaagtgaaaccttatgttcgaaatcaattgtttttgttagATATCCTTTTGATGAAGCTGCTGCGATAGGTATTTCAACCATCAAACAATTCTCTACTGACTTTAAAGAG
                                          ttgttttt  CT-rich tract
                                   aaatcaattgttttt  TA-rich tract