1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaaagattgtaaatttcaagccaaagcaaaacactttgtaaaaaactaatggttgtttcttctgttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTATAATAAGCTTGGA
species | Arabidopsis thaliana |
transcript | AT2G39990.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGATAACCTCGTGAATGATAGTCTCCAG GACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGTEST: gi|116465239|gb|EG507831.1|EG507831
genomic: CGATAACCTCGTGAATGATAGTCTCCAGgtaaaagatt ... gttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
EST: CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAG GACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGTEST: gi|116476016|gb|EG518608.1|EG518608
genomic: CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGgtaaaagatt ... gttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
EST: CCAAGTTACCTCCACAAGTCTTTGATAACCTCGTGAATGATAGTCTCCAG GACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGTEST: gi|116465250|gb|EG507842.1|EG507842
genomic: CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGgtaaaagatt ... gttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
EST: CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAG GACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGEST: gi|301502809|gb|HO208349.1|HO208349
genomic: CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGgtaaaagatt ... gttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAG
EST: CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAG GACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
genomic: CCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGgtaaaagatt ... gttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGT
agccaaagcaaaacactttgtaaaaaactaatggttgtttcttctgttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTATAATAAGCTTGGA
aactaat putative branch site (score: 2)
tttcttctgttatttc putative PPT
tttgtaaaaaactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagattgtaaatttcaagccaaagcaaaacactttgtaaaaaactaatggttgtttcttctgttatttcagGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTATAATAAGCTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT