1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatacatatatgcacacatatatatatatataataatcaatatactcttaatttgtgttaatgtccttctgaagtgactaaggttgtgtgttttgtcttctctcttgattcaagTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTTACTCATCCCAAATGCGAAGTTTGTCACCATTTT
species | Arabidopsis thaliana |
transcript | AT2G39830.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAG TTCTCTCTGTCAGGAACCAAACCCTATTCATAAGCTTTGTTTCAAAGAGCTEST: gi|116398788|gb|EG441380.1|EG441380
genomic: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGgtatacatat ... ttgattcaagTTCTCTCTGTCAGGAACCAAACCCTA-TCATAAGCTTTGTTTCAAAGAGCT
EST: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAG TTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTTEST: gi|116398790|gb|EG441382.1|EG441382
genomic: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGgtatacatat ... ttgattcaagTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
EST: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAG TTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTTEST: gi|116398781|gb|EG441373.1|EG441373
genomic: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGgtatacatat ... ttgattcaagTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
EST: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAG TTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTTEST: gi|116398778|gb|EG441370.1|EG441370
genomic: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGgtatacatat ... ttgattcaagTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
EST: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAG TTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
genomic: CTGAATGCTTCCGTTGCCATTCTTGTGGTTATGCTATCACTGAGCATGAGgtatacatat ... ttgattcaagTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTT
aatgtccttctgaagtgactaaggttgtgtgttttgtcttctctcttgattcaagTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTTACTCATCCCAAATGCGAAGTTTGTCACCATTTT
ttttgtcttctctctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacatatatgcacacatatatatatatataataatcaatatactcttaatttgtgttaatgtccttctgaagtgactaaggttgtgtgttttgtcttctctcttgattcaagTTCTCTCTGTCAGGAACCAAACCCTATCATAAGCTTTGTTTCAAAGAGCTTACTCATCCCAAATGCGAAGTTTGTCACCATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT