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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggccacatttacaaaagaagttactgaaattttcttataacataacacacaaaacttgaacttaaaatcaaattttatgttccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAG

Basic information

species Arabidopsis thaliana
transcript AT2G39690.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116384467|gb|EG427059.1|EG427059
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
EST: gi|116384469|gb|EG427061.1|EG427061
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
EST: gi|116384466|gb|EG427058.1|EG427058
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
EST: gi|116383991|gb|EG426583.1|EG426583
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
EST: gi|116383984|gb|EG426576.1|EG426576
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATATATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
EST: gi|116384465|gb|EG427057.1|EG427057
EST:     AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCAT                         GCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG
genomic: AGCAAAAACTAGCCTTCTGGATCAATATCTACAACGCATGTATCATGCATgtacggccac ... ccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacataacacacaaaacttgaacttaaaatcaaattttatgttccaatgatagGCATTTCTTGAGTATGGGTTACCATCGTCACACAATAGACTACTTACCTTGATGAACAAG
              aaaacttgaacttaaa  TA-rich tract