Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaacgaaactattttccttaactgatcaaaagtcttaatactttccaatgaaaaaagacttataccatagcttgaatccaatctgatatagaaaacgttaaactgaattagagcttgaaatgtttttccttcagattgttttcttgtttctgattagacattgaagcatgacgtgttataatattgcagGATAGTAGCTGTGAGTTTGGTTACCGTCTTGTCGGGGATGTATGTTACGAGGAAGCGTTAG

Basic information

species Arabidopsis thaliana
transcript AT2G38660.4
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124908961|gb|EH983041.1|EH983041
EST:     GGCTTAAGCCTGGAGCAGTTGTCATTGATGTTGGAACAACTCCAGTCGAG                         GATAGTAGCTGTGAGTTTGGTTACCGT
genomic: GGCTTAAGCCTGGAGCAGTTGTCATTGATGTTGGAACAACTCCAGTCGAGgtaaaaacga ... aatattgcagGATAGTAGCTGTGAGTTTGGTTACCGT
EST: gi|125294762|gb|EL308847.1|EL308847
EST:     AGCCTGGAGCAGTTGTCATTGATGTTGGAACAACTCCAGTCGAG                         GATAGTAGCTGTGAGTTTGGTTACCG
genomic: AGCCTGGAGCAGTTGTCATTGATGTTGGAACAACTCCAGTCGAGgtaaaaacga ... aatattgcagGATAGTAGCTGTGAGTTTGGTTACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttttcttgtttctgattagacattgaagcatgacgtgttataatattgcagGATAGTAGCTGTGAGTTTGGTTACCGTCTTGTCGGGGATGTATGTTACGAGGAAGCGTTAG
             ttctgat  putative branch site (score: 3)
                                       tgttataatatt  TA-rich tract