1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacttttattgtttacttgcatccggtacaaattgcaatggcggaatattctcatcttgcaatattgctcttggattcagGGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGAGAATTACTTGTGGGAAAAGATGACGAGCTACTTGAGACAGAAACAAGAACAATCGCAAGAGCT
species | Arabidopsis thaliana |
transcript | AT2G37660.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATACACCATCATCAG GGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGAGAATTACTTGTGGGEST: gi|125188085|gb|EL203039.1|EL203039
genomic: AAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATACACCATCATCAGgtaactttta ... ttggattcagGGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGAGAATTACTTGTGGG
EST: AAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATACACCATCATCAG GGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGAGAATEST: gi|124951965|gb|EL027281.1|EL027281
genomic: AAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATACACCATCATCAGgtaactttta ... ttggattcagGGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGAGAAT
EST: ATTCCGGTATTCCATACACCATCATCAG GGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGCGAATTACTTGTGGGEST: gi|47831378|gb|CK121062.1|CK121062
genomic: ATTCCGGTATTCCATACACCATCATCAGgtaactttta ... ttggattcagGGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGAGAATTACTTGTGGG
EST: AAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATACACCATCATCAG GGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGAGAATTACTTGTGGGEST: gi|164146155|gb|ES213670.1|ES213670
genomic: AAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATACACCATCATCAGgtaactttta ... ttggattcagGGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGAGAATTACTTGTGGG
EST: CTTGGCTGATTCCGGTATTCCATACACCATCATCAG GGCNGGAGGTCTGCAGGACAAGGACGGTGGCATTACGAGAATTACTTGTGGEST: gi|124937599|gb|EL014339.1|EL014339
genomic: CTTGGCTGATTCCGGTATTCCATACACCATCATCAGgtaactttta ... ttggattcagGGCTGGAGGTCTGCAGGACAAGGACGGTGGCATT-CGAGAATTACTTGTGG
EST: AAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATACACCATCATCAG GGACTGGAGGTCTGCAGGACAAG
genomic: AAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATACACCATCATCAGgtaactttta ... ttggattcagGG-CTGGAGGTCTGCAGGACAAG
gtacaaattgcaatggcggaatattctcatcttgcaatattgctcttggattcagGGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGAGAATTACTTGTGGGAAAAGATGACGAGCTACTTGAGACAGAAACAAGAACAATCGCAAGAGCT
ttgctctt CT-rich tract
aatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttttattgtttacttgcatccggtacaaattgcaatggcggaatattctcatcttgcaatattgctcttggattcagGGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGAGAATTACTTGTGGGAAAAGATGACGAGCTACTTGAGACAGAAACAAGAACAATCGCAAGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT