1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgacttgggctaggaaaagcatatttgagtacccaatagcattaatagttgttacaattgtttcaaggctaagctaacaatgatcctgtaaaatttgcagGCTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTGATGCCAGAGGAAAATGCATTTTG
species | Arabidopsis thaliana |
transcript | AT2G37290.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAG GCTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTEST: gi|116401134|gb|EG443726.1|EG443726
genomic: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAGgtgacttggg ... aaatttgcagGCTATGAACTTTTTTGCTGGACTGTTGCTTCTGTT
EST: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAG GCTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTGATEST: gi|116398843|gb|EG441435.1|EG441435
genomic: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAGgtgacttggg ... aaatttgcagGCTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTGAT
EST: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAG GCTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTEST: gi|116398833|gb|EG441425.1|EG441425
genomic: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAGgtgacttggg ... aaatttgcagGCTATGAACTTTTTTGCTGGACTGTTGCTTCTGTT
EST: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAG GCTATGAACTTTTTTGCTGGACTGTTGCEST: gi|116398836|gb|EG441428.1|EG441428
genomic: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAGgtgacttggg ... aaatttgcagGCTATGAACTTTTTTGCTGGACTGTTGC
EST: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAG GCTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTEST: gi|116401146|gb|EG443738.1|EG443738
genomic: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAGgtgacttggg ... aaatttgcagGCTATGAACTTTTTTGCTGGACTGTTGCTTCTGTT
EST: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAG GCTATGAACTTTATTGCTGGACTGTTG
genomic: GGATACTTCTAGCTTATGCTTGTCACAACCCATCTGTTGGCTACTGTCAGgtgacttggg ... aaatttgcagGCTATGAACTTTTTTGCTGGACTGTTG
tagttgttacaattgtttcaaggctaagctaacaatgatcctgtaaaatttgcagGCTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTGATGCCAGAGGAAAATGCATTTTG
agctaac putative branch site (score: 2)
tgtaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacttgggctaggaaaagcatatttgagtacccaatagcattaatagttgttacaattgtttcaaggctaagctaacaatgatcctgtaaaatttgcagGCTATGAACTTTTTTGCTGGACTGTTGCTTCTGTTGATGCCAGAGGAAAATGCATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA