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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttctcttgattactaaaaaagcctggtgagtagttccttttatgagatgatctaattatctgtaatcaactttctctcaatacagAGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAA

Basic information

species Arabidopsis thaliana
transcript AT2G37240.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116467378|gb|EG509970.1|EG509970
EST:     GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG                         AGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTT
genomic: GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGgtatgttttc ... ctcaatacagAGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTT
EST: gi|125319140|gb|EL333225.1|EL333225
EST:     GAACAGACTAAGTTTAAAGGAG                         AGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTT
genomic: GAACAGACTAAGTTTAAAGGAGgtatgttttc ... ctcaatacagAGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTT
EST: gi|116467371|gb|EG509963.1|EG509963
EST:     GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG                         AGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTT
genomic: GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGgtatgttttc ... ctcaatacagAGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTT
EST: gi|124974394|gb|EL047956.1|EL047956
EST:     GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAG                         AGGTCTATGCGGATCCAAACCAACGCATCATACGAGGCGCTTGAGTTCGTT
genomic: GCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGgtatgttttc ... ctcaatacagAGGTCTATGCGGATCCAAACCA-CGCATCATACGAGGCGCTTGAGTTCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttccttttatgagatgatctaattatctgtaatcaactttctctcaatacagAGGTCTATGCGGATCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTACACCCAAA
                   atctaat  putative branch site (score: 3)
                                       ctttctctc  putative PPT
                      taattatctgtaat  TA-rich tract