Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatcatttttatccctaaatcttactttccatcttcccccttagcatcctacttgatagcaacttatgaaaaacctttggataaatgcaaatgggtgatgcaatgtttgagcagCCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGAAAGGTGATGAATTTCCTGACAGATCTTCATGCAGCCTTTCGCATGCTCA

Basic information

species Arabidopsis thaliana
transcript AT2G37020.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37020.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os10g30640.1 (Oryza sativa), 3'ss of exon 5
gtaagatcatttttatccctaaatcttactttccatcttcccccttagcatcctacttgatagcaacttatgaaaaacctttggataaatgcaaatgggtgatgcaatgtttgagcagCCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGAAAGGTGATGAATTTCCTGACAGATCTTCATGCAGCCTTTCGCATGCTCA
        |  || |  |   ||| |   |||   | ||    || |   | ||| |     |  || | |  |      |||    | | || |   || |||| || |||| |||||| || || || || || || || || || |||||||||||||| |||||||||||| ||   || |||||||| ||||||||  | ||| | ||||| |
--------aacttcacacgataatgtctgttt---ttttttaactgaatgttctattgttctgttacattttga------ttgatgtagtacataactgtaatgctat-tttgtgcagCCGAGATATGTAGTGAACCGTGTCACTGCTGGAGACTATGACTGTCCAAGAAAGGTGTTGTCATTTCTGACAGACCTTCATGCTTCATTTAGGATGCTGA

upper sequence: AT2G37020.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv08s0040g01630.t01 (Vitis vinifera), 3'ss of exon 5
gtaagatcatttttatccctaaatcttactttccatcttcccccttagcatcctacttgatagcaacttatgaaaaacctttggataaatg--caaatgggtgatgcaatgtttgagcagCCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGAAAGGTGATGAATTTCCTGACAGATCTTCATGCAGCCTTTCGCATGCTCA
                     |||     | |  |  |        |   |     || |    |  | |  |     ||||  ||   |    || ||||  |||  |   |   |||||| ||||| ||||| || | ||||||||| || |||||||| ||||||||||||||| |||| ||| | |||||||| ||||||||||| |||||||| |
-----------------gtgcaatggggatgtttagttgtaagaagaatttagctgttaagtttagatcagaattttgctttaaatcggtagttaattgggctatgtgaatct---gcagCCAAGGTATGTGGTGAACCAAGTGACAGCTGGTGACTATGATTGCCCAAGAAAGGTGTTGAAGTTCTTAACAGATCTCCATGCAGCCTTCCGCATGCTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081369|gb|DR377126.1|DR377126
EST:     GAATTTGTTTCATGTCAAACGATTTG                         CCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA
genomic: GAATTTGTTTCATGTCAAACGATTTGgtaagatcat ... gtttgagcagCCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA
EST: gi|116444079|gb|EG486671.1|EG486671
EST:     GAATTTGTTTCATGTCAAACGATTTG                         CCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA
genomic: GAATTTGTTTCATGTCAAACGATTTGgtaagatcat ... gtttgagcagCCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA
EST: gi|86086716|gb|DR382475.1|DR382475
EST:     GAATTTGTTTCATGTCAAACGATTTG                         CCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA
genomic: GAATTTGTTTCATGTCAAACGATTTGgtaagatcat ... gtttgagcagCCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacttatgaaaaacctttggataaatgcaaatgggtgatgcaatgtttgagcagCCTAGGTACGTGGTTAATCGAGTGACAGCAGGAGACTATGACTGCCCAAGAAAGGTGATGAATTTCCTGACAGATCTTCATGCAGCCTTTCGCATGCTCA
     tatgaaaaa  TA-rich tract