1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaagtacttgcacgatcttgcaatgtgaagccttgatgatttattaagttataggatcaagaaactcgttgaatgtgcaggagAAACCCGAACTGAGGAACGTGCACGGGATCCTTGGGAGCGGGATAATGGCGCTTTTCCTCGTCCATGCTGCTTTCGGCCTTCAGCTCGGTCTCAGTTTCT
species | Arabidopsis thaliana |
transcript | AT2G36885.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGGTCTTGGCCTATTGACGGTTCAAACAATCTTACCATCTTTGTTCAAG GEST: gi|86078685|gb|DR374442.1|DR374442
genomic: TAGGTCTTGGCCTATTGACGGTTCAAACAATCTTACCATCTTTGTTCAAGgtaaagtact ... tgtgcaggag-
EST: TAGGTCTTGGCCTATTGACGGTTCAAACAATCTTACCATCTTTGTTCAAG G
genomic: TAGGTCTTGGCCTATTGACGGTTCAAACAATCTTACCATCTTTGTTCAAGgtaaagtact ... tgtgcaggag-
agccttgatgatttattaagttataggatcaagaaactcgttgaatgtgcaggagAAACCCGAACTGAGGAACGTGCACGGGATCCTTGGGAGCGGGATAATGGCGCTTTTCCTCGTCCATGCTGCTTTCGGCCTTCAGCTCGGTCTCAGTTTCT
ccttgat putative branch site (score: 5)
atgatttattaagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtacttgcacgatcttgcaatgtgaagccttgatgatttattaagttataggatcaagaaactcgttgaatgtgcaggagAAACCCGAACTGAGGAACGTGCACGGGATCCTTGGGAGCGGGATAATGGCGCTTTTCCTCGTCCATGCTGCTTTCGGCCTTCAGCTCGGTCTCAGTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC