Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacccctccttgtaacctcatcttaatcttctgttaatgaaaaaggaaatgctggtttcattttgttggtctctgttctatatgcagATATATGGTGACCCGGAAGCAGCTGATGTTGTTTTCACATCTGGAGCGGATATCACTGTTGTCGGTATAAACATCACAACCCAACTTAAACTATCAG

Basic information

species Arabidopsis thaliana
transcript AT2G36310.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116442244|gb|EG484836.1|EG484836
EST:     GTGGAGCTTTCTTTTCTTTGGGAAATGTCAATCCTGCAGCTGAGGCTAAT                         ATATATGGTGA
genomic: GTGGAGCTTTCTTTTCTTTGGGAAATGTCAATCCTGCAGCTGAGGCTAATgtaacccctc ... ctatatgcagATATATGGTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatgaaaaaggaaatgctggtttcattttgttggtctctgttctatatgcagATATATGGTGACCCGGAAGCAGCTGATGTTGTTTTCACATCTGGAGCGGATATCACTGTTGTCGGTATAAACATCACAACCCAACTTAAACTATCAG
 tgttaat  putative branch site (score: 3)
                                     tctctgttct  putative PPT
                       tttcatttt  TA-rich tract