1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaaacacatcactctttagatcacaactttaagagaaggtttatgagtaatcttatctttcaacttctgtttgtttcttctaacagTCGCAGAGAGATTCAACTTACACAAGAATTGATTCAGCAAGAGAAAGCAGAGACTGGACACAAAGAGACAACAACTTCAGACCACCAGGAGGCAGTGTCC
species | Arabidopsis thaliana |
transcript | AT2G35600.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAGATTTAACCGACAAGCTCTTCAAACTCCTGGTAGATCCGAGGACCAG TCGCAGAGAGATTCAACTTACACAAGAATCGATTCAGCAAGAGAAAGCAGAEST: gi|164089993|gb|ES052233.1|ES052233
genomic: AAAGATTTAACCGACAAGCTCTTCAAACTCCTGGTAGATCCGAGGACCAGgtaaaacaca ... cttctaacagTCGCAGAGAGATTCAACTTACACAAGAATTGATTCAGCAAGAGAAAGCAGA
EST: GATTTAACCGACAAGCTCTTCAAACTCCTGGTAGATCCGAGGACCAG TCGCAGAGAGATTCAACTTACACAAGAATCGATTCAGCAAGAG
genomic: GATTTAACCGACAAGCTCTTCAAACTCCTGGTAGATCCGAGGACCAGgtaaaacaca ... cttctaacagTCGCAGAGAGATTCAACTTACACAAGAATTGATTCAGCAAGAG
agagaaggtttatgagtaatcttatctttcaacttctgtttgtttcttctaacagTCGCAGAGAGATTCAACTTACACAAGAATTGATTCAGCAAGAGAAAGCAGAGACTGGACACAAAGAGACAACAACTTCAGACCACCAGGAGGCAGTGTCC
cttctgtttgtttctt CT-rich tract
taatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacacatcactctttagatcacaactttaagagaaggtttatgagtaatcttatctttcaacttctgtttgtttcttctaacagTCGCAGAGAGATTCAACTTACACAAGAATTGATTCAGCAAGAGAAAGCAGAGACTGGACACAAAGAGACAACAACTTCAGACCACCAGGAGGCAGTGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA