1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagtaaaacggcatggagttgtcattttaccgacaaaccaagtttcctatctctctctattccccatcaacttctccttttccaggctgaatcatctatgaaccattcttgtttcagGAACCATTGTAAAAGGAGCAGCTTTGTTACACCAGGAAGGTGCTCGGGAGGTATATGCGTGCTGCACACACGCTGTTTTCAGGTAAACCACTAACCTATA
species | Arabidopsis thaliana |
transcript | AT2G35390.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTAAGAGGGAAGGTGGCAATAATGGTGGATGATATGATTGATACTGCTG GAACCATTGTAAAAGGAGCAGCTTTGTTACACCAGGAAGGTGCTCGGGAGEST: gi|124990325|gb|EL062594.1|EL062594
genomic: TGTAAGAGGGAAGGTGGCAATAATGGTGGATGATATGATTGATACTGCTGgttagtaaaa ... cttgtttcagGAACCATTGTAAAAGGAGCAGCTTTGTTACACCAGGAAGGTGCTCGGGAG
EST: TGGTGGATGATATGATTGATACTGCTG GAACCATTGTAAAAGGAGCAGCTTTGTTACACCAGGAAGGTGCTCGGGAGG
genomic: TGGTGGATGATATGATTGATACTGCTGgttagtaaaa ... cttgtttcagGAACCATTGTAAAAGGAGCAGCTTTGTTACACCAGGAAGGTGCTCGGGAGG
cccatcaacttctccttttccaggctgaatcatctatgaaccattcttgtttcagGAACCATTGTAAAAGGAGCAGCTTTGTTACACCAGGAAGGTGCTCGGGAGGTATATGCGTGCTGCACACACGCTGTTTTCAGGTAAACCACTAACCTATA
ttcttgtttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtaaaacggcatggagttgtcattttaccgacaaaccaagtttcctatctctctctattccccatcaacttctccttttccaggctgaatcatctatgaaccattcttgtttcagGAACCATTGTAAAAGGAGCAGCTTTGTTACACCAGGAAGGTGCTCGGGAGGTATATGCGTGCTGCACACACGCTGTTTTCAGGTAAACCACTAACCTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT