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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatctttatcttcaatgtctggattcctgaaaatgcccaacgtttttgcaatgccattgaatatgagacattttgtatagagaggtagtgtctctaacaagtcgtttctgtttaatctcctttgatggctttctttgttatcacggggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG

Basic information

species Arabidopsis thaliana
transcript AT2G35360.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116394649|gb|EG437241.1|EG437241
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394635|gb|EG437227.1|EG437227
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394647|gb|EG437239.1|EG437239
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394640|gb|EG437232.1|EG437232
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394655|gb|EG437247.1|EG437247
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394641|gb|EG437233.1|EG437233
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394634|gb|EG437226.1|EG437226
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394653|gb|EG437245.1|EG437245
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394642|gb|EG437234.1|EG437234
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|124945308|gb|EL021326.1|EL021326
EST:     ATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: ATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394656|gb|EG437248.1|EG437248
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394643|gb|EG437235.1|EG437235
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394650|gb|EG437242.1|EG437242
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394651|gb|EG437243.1|EG437243
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394652|gb|EG437244.1|EG437244
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394644|gb|EG437236.1|EG437236
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394645|gb|EG437237.1|EG437237
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
EST: gi|116394636|gb|EG437228.1|EG437228
EST:     GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTT                         ATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG
genomic: GGTTTATCTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTgtaagtcatc ... ggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtttctgtttaatctcctttgatggctttctttgttatcacggggggtttcagATACTAGGGACTGGATTTTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAG
       tgtttaat  TA-rich tract