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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacaactcaacatttacccgcctattgttattagtctagatgaagagctagaccatttaacttttgccttttttccatcgcagGCTGTCACTAGTGGAAAGTATTTAGACTCTTGTCTGAATATGCTCGTAAGCAACTTCGTTCCACCTCCTTGGGTAGTGAATAACCTTTCGCACTCCCGTA

Basic information

species Arabidopsis thaliana
transcript AT2G34750.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164103864|gb|ES178668.1|ES178668
EST:     GATGTCATGGATGCATT-GTGAACCTTGTCATATCACTG                         GCTGTCACTAGTGGAAAGTATTTAGACTCTTGTCTGAATATGC
genomic: GATGTCATGGATGCATTGGTGAACCTTGTCATATCACTGgtacacaact ... tccatcgcagGCTGTCACTAGTGGAAAGTATTTAGACTCTTGTCTGAATATGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattagtctagatgaagagctagaccatttaacttttgccttttttccatcgcagGCTGTCACTAGTGGAAAGTATTTAGACTCTTGTCTGAATATGCTCGTAAGCAACTTCGTTCCACCTCCTTGGGTAGTGAATAACCTTTCGCACTCCCGTA
                          atttaac  putative branch site (score: 3)
                           tttaacttttgccttt  CT-rich tract
                          atttaactttt  TA-rich tract