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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaaagtcaatttttactcattgtttcttctcagttgaggaaatgtaaaatgtctctaacaacatgtccatctacagATTTGGTTTCGTGTCAATGAGCAGCTTCCTGCTAATTTACAGAAATCATTACCGGATCGACCACCTGAAATGCAATCTACTGGAGTCCATGATG

Basic information

species Arabidopsis thaliana
transcript AT2G32850.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32850.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA08G15920.1 (Glycine max), 3'ss of exon 6
gttaaaagtcaatttttact--cattgtttcttctcag--ttgaggaaatgtaa-aatgtctctaacaacatgtccat--ctacagATTTGGTTTCGTGTCAATGAGCAGCTTCCTGCTAATTTACAGAAATCATTACCGGATCGACCACCTGAAATGCAATCTACTGGAGTCCATGATG------
|| | |  |||    | | |  ||||  |   |   ||  ||  || |||  |  | || || |         ||| |     ||| | ||||||||||| |||||||| || |||  |||||||||||| |||||||| ||  ||||||||||| |||  ||  |    |  ||||| |      
gtcatagatcatccatcaatagcattcataggtactagaattagggcaattaattactgactttggatgttcttccgtggtggcagGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCATTACCTGACAGACCACCTGAATTGCCCTCATCCAACGATCATGAAGGTGACG

upper sequence: AT2G32850.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA15G42460.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------gttaaaagtcaattttt------actcattgtttcttctcag--ttgaggaaatgtaaaa-tgtctctaacaacatgtccat--ctacagATTTGGTTTCGTGTCAATGAGCAGCTTCCTGCTAATTTACAGAAATCATTACCGGATCGACCACCTGAAATGCAATCTACTGGAGTCCATGATG
                                               || | |  |||    ||      | |||| | | | |   ||  ||  || |||  |  | || || |      |  |||||     ||| | ||||||||||| |||||||| || |||  |||||||||||| || ||||| ||  |||||||||||  ||  ||  ||      ||||| |
gcaagcgctttgcttgattgaccattcatctccatcagtttaggttggtcatagatcatccattgatagcattcataggtacgtactagaattagggcaattaattactgactttggatgtacttccatggtggcagGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCGTTACCTGACAGACCACCTGAATCGCCCTCATCTAACAATCATGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcttctcagttgaggaaatgtaaaatgtctctaacaacatgtccatctacagATTTGGTTTCGTGTCAATGAGCAGCTTCCTGCTAATTTACAGAAATCATTACCGGATCGACCACCTGAAATGCAATCTACTGGAGTCCATGATG
                               ctctaac  putative branch site (score: 2)
                                            tccatct  putative PPT
                  aaatgtaaaat  TA-rich tract