1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatacttcttctttctctttgtttctttcattagtttcttacatctgatcttactttgttttgttggcattacttacagATGATGCAAAACATGTCTCTTGAAGAGGGAGACGTTATGCAAGTTAAGAATATCAGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAG
species | Arabidopsis thaliana |
transcript | AT2G29070.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGTACTAGAATTCACTGCAGACGAAGGCCTAGTTTACTTGCCATATTGG ATGATGCAAAACATGTCTCTTGAAGAGGGAGEST: gi|86072862|gb|DR368619.1|DR368619
genomic: GTGTACTAGAATTCACTGCAGACGAAGGCCTAGTTTACTTGCCATATTGGgtatacttct ... ttacttacagATGATGCAAAACATGTCTCTTGAAGAGGGAG
EST: GTGTACTAGAATTCACTGCAGACGAAGGCCTAGTTTACTTGCCATATTGG ATGATGCAAAACATGTCTCTTGAAGAGGGAGACGTTATGCAAGTTAAGAATEST: gi|164016625|gb|ES207895.1|ES207895
genomic: GTGTACTAGAATTCACTGCAGACGAAGGCCTAGTTTACTTGCCATATTGGgtatacttct ... ttacttacagATGATGCAAAACATGTCTCTTGAAGAGGGAGACGTTATGCAAGTTAAGAAT
EST: TGTACTAGAATTCACTAGCAGACGAAGGCCTAGTTTACTTGCCATATTGG ATGATGCAAAACATGTCTCTTGAAGAGGGAG
genomic: TGTACTAGAATTCACT-GCAGACGAAGGCCTAGTTTACTTGCCATATTGGgtatacttct ... ttacttacagATGATGCAAAACATGTCTCTTGAAGAGGGAG
ctttcattagtttcttacatctgatcttactttgttttgttggcattacttacagATGATGCAAAACATGTCTCTTGAAGAGGGAGACGTTATGCAAGTTAAGAATATCAGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAG
attagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacttcttctttctctttgtttctttcattagtttcttacatctgatcttactttgttttgttggcattacttacagATGATGCAAAACATGTCTCTTGAAGAGGGAGACGTTATGCAAGTTAAGAATATCAGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG