1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacatataccttatgtctctttcaactactgatttcgctagagaccggataagtttgtctctttcaactactaattgttctaaaaactttttttttgtagGGATTGTTTACAGAAGGTTTCTTTTGGATTCCATCTCTGGGTGGACCAACATCTATAGCTGCTCGGCAGAGTGGATCCGGCATTTCGTGGCTTTTTCCGT
species | Arabidopsis thaliana |
transcript | AT2G28800.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACCAGTTTGGATTGGTTTATACCAAGCTCTCTCTAACGTGGCCAACGAG GGATTGTTTACAGAAGGEST: gi|116412155|gb|EG454747.1|EG454747
genomic: TACCAGTTTGGATTGGTTTATACCAAGCTCTCTCTAACGTGGCCAACGAGgtacatatac ... ttttttgtagGGATTGTTTACAGAAGG
EST: TACCAGTTTGGATTGGTTTATACCAAGCTCTCTCTAACGTGGCCAACGAG GGATTGTTTACAGAAGGTTTCTTTTGGATTCCATCTCTGGGTGGACCAACA
genomic: TACCAGTTTGGATTGGTTTATACCAAGCTCTCTCTAACGTGGCCAACGAGgtacatatac ... ttttttgtagGGATTGTTTACAGAAGGTTTCTTTTGGATTCCATCTCTGGGTGGACCAACA
cggataagtttgtctctttcaactactaattgttctaaaaactttttttttgtagGGATTGTTTACAGAAGGTTTCTTTTGGATTCCATCTCTGGGTGGACCAACATCTATAGCTGCTCGGCAGAGTGGATCCGGCATTTCGTGGCTTTTTCCGT
ctttttttttgt CT-rich tract
tactaattgttctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatataccttatgtctctttcaactactgatttcgctagagaccggataagtttgtctctttcaactactaattgttctaaaaactttttttttgtagGGATTGTTTACAGAAGGTTTCTTTTGGATTCCATCTCTGGGTGGACCAACATCTATAGCTGCTCGGCAGAGTGGATCCGGCATTTCGTGGCTTTTTCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA