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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgaaattatttagcatgcccatactctatatgtttcaacatagtcgtagtggccagttggtattgttttattgacttgatataagtgcagCTAGGGTGTTTGCTTTCCTATCTGGTCCTCCTGATTATGGACGTGGACAATTGGATACAAGTAGATATGGTGAACAATATGCAAGTAAAAGGGTAGATGC

Basic information

species Arabidopsis thaliana
transcript AT2G27460.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27460.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os05g37120.2 (Oryza sativa), 3'ss of exon 5
--------------------------------------------------------gtatgtgaaattatttag-catgcccatactctat---atgtttcaacatagtcgtagtggccagttggtattgttttattgacttgatataagtgcagCTAGGGTGTTTGCTTTCCTATCTGGTCCTCCTGATTATGGACGTGGACAATTGGATACAAGTAGATATGGTGAACAATATGCAAGTAAAAGGGTAGATGC
                                                         |   | |  ||  | ||  | |   ||   ||     || |||  |   | || |  | |||       ||| |||| || |    |  | |   |||||||||| |||||||| || |||||| ||||||||||||||  ||| ||| | || || || |||||||||||||||||||| || ||| ||| |||  |
gtatggtaacatatattcccaatgtgtgcattttttttaaatgattcttgtcagtcatgcattacttttctaagataagatgatgtacttgctgatatttttattaaatctttttagcctaactacattttttttttaaaaaaaattcaa-acagCTAGGGTATTTGCTTTTCTGTCTGGTGCTCCTGATTATGGAGATGGTCAACTAGACACTAGGAGATATGGTGAACAATATGCTAGCAAAGGGGAAGACCC

upper sequence: AT2G27460.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G141735_T01 (Zea mays), 3'ss of exon 5
-------------------------------------------gtatgtgaaattatttagcatgcccata---ctctatatgtttcaacatagtcgtagtggccagt-------tg-gtattgttttattg--acttgatata---agtgcagCTAGGGTGTTTGCTTTCCTATCTGGTCCTCCTGATTATGGACGTGGACAATTGGATACAAGTAGATATGGTGAACAATATGCAAGTAAAAGGGTAGATGC
                                            |    | |||||  |      | | ||     || ||| |||  | | |  | ||||  |||||       || ||| | ||||| ||   ||||  |||   || |||||| |||| |||||||| || |||||| ||||||||||||||  |||     | ||||| || |||||||| || |||||||| |||||| ||||||| ||
gtaggtgaacacactttccatatctcatgagatatctggtgccattcaggcaattagcttcataactcgtaagatgctgtatctttgcaaacaacc-tagtaaccagtatctctatgcgtaattttttaatgttccttgtcatatggagagcagCTCGGGTATTTGCTTTTCTGTCTGGTGCTCCTGATTATGGAGCTGGTGTGCTAGATACCAGGAGATATGGGGAGCAATATGCTAGTAAAGGGGTAGACGC

upper sequence: AT2G27460.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA12G09540.1 (Glycine max), 3'ss of exon 5
----------------------------gtatgtgaaattatttagcatgcccatactctatatgtttcaacatagtcgtagtggcc---agttggtattgttt-tattgacttgatataagtgcagCTAGGGTGTTTGCTTTCCTATCTGGTCCTCCTGATTATGGACGTGGACAATTGGATACAAGTAGATATGGTGAACAATATGCAAGTAAAAGGGTAGATGC
                            || | |||  ||  ||||  ||    |    | |    |     ||| |   ||  ||    ||  | |||| ||| ||||||        || ||||||||| || ||||| ||| | |||||||| ||||||||||||  |||||||||||| |||||  |||||||||||||||||||||| ||| | |  |||||
gtttgaacaaacaaatacaaaacttacagtttatgacttttgttagtgtgtttctttaatgttcaatcttcgatacttaaagaagcttcaagcagatattatttctattgag-------aactgcagCTAGAGTCTTTGCCTTCTTGTCTGGTCCCCCTGATTATGGAGCTGGACAATTGGACACAAGACGATATGGTGAACAATATGCAAGCAAAGGAGAGGATGC

upper sequence: AT2G27460.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA11G18930.1 (Glycine max), 3'ss of exon 5
----------------------------gtatgtgaaattatttagcatgcccatactctatatgtttcaacatagtcgtagtggccagttggtattgttttattgacttgatataagtgcagCTAGGGTGTTTGCTTTCCTATCTGGTCCTCCTGATTATGGACGTGGACAATTGGATACAAGTAGATATGGTGAACAATATGCAAGTAAAAGGGTAGATGC
                            || | |||  ||  | ||  ||    |    | |    |    |||| |   ||  ||     |    |||| | |  | |      || ||||||||| || ||||| ||| | |||||||| ||||||||||||  |||||||||||| || ||  |||||||||||||||||||||| ||| | |  |||||
gtttgaatgaacaaatacaaaacttacagtttatgacttttgtcagtgtgtttctttaatgttcaatcttccatacttaaagaagcttcaagcagatgttatttctattgag---aactgcagCTAGAGTCTTTGCCTTCTTGTCTGGTCCCCCTGATTATGGAGCTGGACAATTGGACACGAGACGATATGGTGAACAATATGCAAGCAAAGGAGAGGATGC

upper sequence: AT2G27460.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv06s0080g00510.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------------------------------------------------------gtatgtgaaattatttagcatgcccatactctatatgtttcaacatagtcgtagtggccagttggtattgttttattgacttgatataagtgcagCTAGGGTGTTTGCTTTCCTATCTGGTCCTCCTGATTATGGACGTGGACAATTGGATACAAGTAGATATGGTGAACAATATGCAAGTAAAAGGGTAGATGC
                                                                          ||  |   ||| |||  | |   ||   |   ||| |||    | | |      || || |    || ||| | || | |  | ||||||||||||||||| ||||| ||  | |||||||||||||| ||||||  ||| ||| | ||||||||  | |||||||| |||||||| |||||| | |  |||||
gtgtgataatgttcaaagctcatcaccctatttgtgctcagttcttgtgcaattaatggctccgctttaactcttaaatttcattttttcactttttcacttttgttattttttg-tacactttctaaggacattctacat-gttattttcattgaaaataagtgcagCTAGGGTCTTTGCCTTTTTGTCTGGTCCTCCTGACTATGGAGCTGGCCAACTAGATACAAGACGGTATGGTGAGCAATATGCTAGTAAAGGTGAGGATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacatagtcgtagtggccagttggtattgttttattgacttgatataagtgcagCTAGGGTGTTTGCTTTCCTATCTGGTCCTCCTGATTATGGACGTGGACAATTGGATACAAGTAGATATGGTGAACAATATGCAAGTAAAAGGGTAGATGC
                         tattgttttattga  TA-rich tract